Modified: analysis/chromatin_states_ENCODE_studies.Rmd Modified: analysis/TSS_profiles_merged_replicates_5kb.Rmdĭeleted: analysis/archive/repeats_differentially_enriched_LTR_elements_old.Rmdĭeleted: analysis/archive/repeats_differentially_expressed_LTR_elements_old.Rmdĭeleted: analysis/archive/repeats_fraction_of_reads_in_LTR_families_ChIPseq.Rmdĭeleted: analysis/archive/repeats_fraction_of_reads_in_LTR_families_RNAseq.Rmdĭeleted: analysis/archive/repeats_fraction_of_reads_in_LTR_families_RNAseq_old.Rmdĭeleted: analysis/archive/repeats_preparation_old.Rmd Modified: analysis/TSS_profiles_merged_replicates_20kb.Rmd Modified: analysis/TSS_profiles_merged_replicates_10kb.Rmd Modified: analysis/TSS_profiles_individual_replicates_10kb.Rmd Untracked: analysis/repeats_expression_of_dsRNA_sensing_pathways.Rmd Untracked: analysis/repeats_expression_combined.Rmd Untracked: analysis/genome_wide_dimensional_reduction_UMAP_50kb.Rmd
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Untracked: analysis/genome_wide_dimensional_reduction_UMAP_10kb.Rmd Untracked: analysis/genome_wide_dimensional_reduction_PCA_50kb.Rmd Untracked: analysis/genome_wide_dimensional_reduction_PCA_2kb.Rmd Untracked: analysis/genome_wide_dimensional_reduction_PCA_10kb.Rmd Untracked: analysis/genome_wide_correlation.Rmd Untracked: analysis/genome_annotation.Rmd Ignored: reference_files/annotations/.DS_Store Ignored: reference_files/ChromHMM/.DS_Store Below is the status of the Git repository when the results were generated: workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). The version displayed above was the version of the Git repository at the time these results were generated. Tracking code development and connecting the code version to the results is critical for reproducibility.
Great! You are using Git for version control. Number of expressed exonic reads and pathway activity.
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